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Machine learning opens new frontiers in red blood cell research


Tuesday, September 29, 2020 Dr. Geraldine Walsh

A recent research paper points towards machine learning as a solution to improve how experts assess the shape of red blood cells, or red blood cell morphology. With the potential to eliminate subjectivity and standardize testing, this approach could herald a new era in red blood cell morphology assessment, with potentially big implications for transfusion medicine research and beyond. 

“This work took over three years and involved 19 experts across five countries and 12 institutes,” explains Dr. Jason Acker, a senior scientist at Canadian Blood Services’ Centre for Innovation.  

The research paper, "Objective assessment of stored blood quality by deep learning", was just published in the high-impact journal Proceedings of the National Academy of Sciences (PNAS).  

Image of Researcher Dr. Jason Acker sitting in the lab at Canadian Blood Services’ Centre for Innovation
Dr. Jason Acker in his laboratory in Edmonton, Alberta 

The work was led by Dr. Acker and colleagues Anne Carpenter of the Broad Institute of Harvard and MIT and Michael Kolios of Ryerson University’s Department of Physics. It combined cutting-edge computational science, transfusion science and physics. The results are a potential breakthrough in how red blood cell quality can be assessed.  

Red blood cell shape 

Red blood cell shape is linked to the quality of stored red blood cell products, but it can be time- and labour-intensive to measure.   

To look at red blood cell shape (also called morphology), blood is smeared on a slide and looked at under a microscope. This method has remained mostly unchanged for decades. In fact, the method used today would probably not be unfamiliar to Ehrlich, one of the fathers of hematology who pioneered staining blood cells for microscopy back in the 1870s. 

The biggest drawback of the current method is that it is subjective – an expert uses their training to categorize each red blood cell seen under the microscope into one of six shape types.  

Six shapes of red blood cells
The six “classical” red blood cell shape categories used by experts. 

 

The researchers looked to an artificial intelligence machine learning approach to overcome these limitations. To start, they needed images of red blood cells. Olga Mykhailova, a postdoctoral fellow in the Acker laboratory used a method that takes pictures of single cells at an incredibly fast rate to collect images of stored red blood cells.  

Image of Lab researchers Dr. Olga Mykhailova and Tracey Turner standing in the lab with a bunch of empty test tubes on the table.
Dr. Olga Mykhailova (L), a postdoctoral fellow in the Acker laboratory, and Tracey Turner, the project’s human expert, who helped label more than 52,000 red blood cell images for the project 

The expert 

Tracey Turner, a senior research assistant in Acker’s laboratory, is an expert in red blood cell morphology. Her skills have been honed over many years working on red blood cell quality monitoring projects for Canadian Blood Services. For this project, over 52,000 red blood cell images collected by Mykhailova and others were manually categorized by a team of researchers trained and supervised by Turner. These images were used to train a neural network which performed well in categorizing cell shape — almost as well as humans. This collection of red blood cell images is now the world’s largest freely available database of annotated red blood cells. 

The work was hard, but Turner was delighted to be part of such an exciting project. 

“I was happy to collaborate with a group of people with diverse backgrounds and expertise. Annotating and reviewing over 52,000 images took a long time; however, it allowed me to see firsthand how much bias there is in manual classification of cell shape by humans and the benefit machine classification could bring”  

Moving away from human subjectivity 

Even more impressive, without knowledge of the categories humans use to classify red blood cells, the machine determined its own progression of cell features that correspond to how long the red blood cells had been stored before being tested, results that the researchers discovered correlate well with a biochemical test of cell quality. 

With the potential to eliminate subjectivity and standardize testing, this approach could herald a new era in red blood cell morphology assessment, with potentially big implications for transfusion medicine research and beyond.

Want to know more? Check out the research unit for this study, as well as the feature article on blood.ca/stories

Canadian Blood Services – Driving world-class innovation

Through discovery, development and applied research, Canadian Blood Services drives world-class innovation in blood transfusion, cellular therapy and transplantation—bringing clarity and insight to an increasingly complex healthcare future. Our dedicated research team and extended network of partners engage in exploratory and applied research to create new knowledge, inform and enhance best practices, contribute to the development of new services and technologies, and build capacity through training and collaboration. Find out more about our research impact

The opinions reflected in this post are those of the author and do not necessarily reflect the opinions of Canadian Blood Services nor do they reflect the views of Health Canada or any other funding agency.

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